miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|200965726|gb|FD052753.1|FD052753 GAGGTCAGTCATATGATCAGCGCATTGAGGCTTAGTCAGTGAAAGAGAAGCGCTTTATGCAGCACAACTCTAAACACACA
CACACGCTTAATTAATGTCAGTCACAGAGGATTAATTTACTGCTTTATCATAGATATGACGACACAGGCCCTTTGTGTGT
GCATGTGTGTGTTTATCGCCGCGGTAATGATCAGTGTGTCGGCAGAGCGCTCGTTCTCTATAGACTACAGTAACGACTGC
TTCCTGAAAGACGAACAGTATTTCCGCTTTGTTTCCGGCAGTGTTCATTATTTCCGAGTCCCACGCTGCTACTGGAAGGA
CAGACTGATGAAGATGTACATGAGCGGCCTCAACGCCATTCAGGTGTATGTGCCCTGGAACTTCCATGAGCCAGTGCAAG
GGGTGTACAACTTTGAGGGGGACAGAGATTTGGAATATTTCCTCCATCTGGCCAACGAGACGGGCCTGCTGGTGATCCTG
AGGCCCGGACCTTACATCTGTGCCGAGTGGGAAATGGGAGGTCTCCCTGCATGGCTGCTCCACAACCCCAAAATTATCCT
GCGGTCAGCAGATTCAGAATACATGCAGGCTGTAGGTGATTGGTTGGCTGTGCTGCTCATTAAAATGCGGACGTGGCTCT
ATCAGAATGGTGGGAACATCATCGGTGTGCAGGTGGAAAATGAGTATGGCAGTTACTTTGCCTGTGATCATAACTACATG
CGGTCT




Most similar to sp|P23780|BGAL_MOUSE

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|P23780|BGAL_MOUSE Beta-galactosidase OS=Mus musculus GN=Glb1
           PE=2 SV=1
          Length = 647

 Score =  270 bits (691), Expect = 6e-72
 Identities = 122/173 (70%), Positives = 146/173 (84%)
 Frame = +1

Query: 205 ERSFSIDYSNDCFLKDEQYFRFVSGSVHYFRVPRCYWKDRLMKMYMSGLNAIQVYVPWNF 384
           +R+F +DYS D FLKD Q FR++SGS+HYFR+PR YW+DRL+KM M+GLNAIQ+YVPWNF
Sbjct: 30  QRTFKLDYSRDRFLKDGQPFRYISGSIHYFRIPRFYWEDRLLKMKMAGLNAIQMYVPWNF 89

Query: 385 HEPVQGVYNFEGDRDLEYFLHLANETGLLVILRPGPYICAEWEMGGLPAWLLHNPKIILR 564
           HEP  G Y F GDRD+E+F+ LA+E GLLVILRPGPYICAEW+MGGLPAWLL    I+LR
Sbjct: 90  HEPQPGQYEFSGDRDVEHFIQLAHELGLLVILRPGPYICAEWDMGGLPAWLLEKQSIVLR 149

Query: 565 SADSEYMQAVGDWLAVLLIKMRTWLYQNGGNIIGVQVENEYGSYFACDHNYMR 723
           S+D +Y+ AV  WLAVLL KM+  LYQNGG II VQVENEYGSYFACD++Y+R
Sbjct: 150 SSDPDYLVAVDKWLAVLLPKMKPLLYQNGGPIITVQVENEYGSYFACDYDYLR 202